MRIQC: individual T1w report

Summary

Subject ID: 046_ControlPre.
Date and time: 2018-05-06, 22:50.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.27859380754174734
cnr			4.519409049758413
efc			0.6102610152284795
fber			73.51237487792969
fwhm	avg		3.9121733333333335
fwhm	x		3.80661
fwhm	y		4.14356
fwhm	z		3.78635
icvs	csf		0.20782589086437717
icvs	gm		0.46549669156003004
icvs	wm		0.3266774175755928
inu	med		1.1466578245162964
inu	range		0.33249982595443717
qi	1		0.0
qi	2		0.0008385838331280143
rpve	csf		23.462695854292033
rpve	gm		11.747895579882968
rpve	wm		19.273117405843564
size	x		180
size	y		256
size	z		256
snr	csf		2.835589802308237
snr	gm		10.481764843052648
snr	total		11.2997095004308
snr	wm		20.581773855931516
snrd	csf		12.278699267700825
snrd	gm		24.877009561713752
snrd	total		25.375148072717618
snrd	wm		38.96973538873828
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.7477993063638158
summary	bg	mad	16.81157875061035
summary	bg	mean	61.37723159790039
summary	bg	median	58.927608489990234
summary	bg	n	2851108.0
summary	bg	p05	36.67909545898438
summary	bg	p95	94.48470726013184
summary	bg	stdv	18.252243041992188
summary	csf	k	-0.0405618493195834
summary	csf	mad	123.15512084960938
summary	csf	mean	318.0879821777344
summary	csf	median	315.0860290527344
summary	csf	n	19117.0
summary	csf	p05	145.2146728515625
summary	csf	p95	496.56533203125
summary	csf	stdv	111.11543273925781
summary	gm	k	0.37767427366250494
summary	gm	mad	57.37206268310547
summary	gm	mean	639.7645874023438
summary	gm	median	638.3736572265625
summary	gm	n	37944.0
summary	gm	p05	542.0676544189453
summary	gm	p95	743.7293182373046
summary	gm	stdv	60.90245819091797
summary	wm	k	1.0491425931107639
summary	wm	mad	43.37751770019531
summary	wm	mean	997.3768310546875
summary	wm	median	1000.009765625
summary	wm	n	185899.0
summary	wm	p05	912.3724609375
summary	wm	p95	1071.5480346679688
summary	wm	stdv	48.58702087402344
tpm	overlap	csf	0.21046942472457886
tpm	overlap	gm	0.5278806090354919
tpm	overlap	wm	0.5343533754348755
wm2max			0.5718595662186237

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	53ff3a7c9000f82e4ad6b71919f800ab
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.