MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.27859380754174734
cnr4.519409049758413
efc0.6102610152284795
fber73.51237487792969
fwhmavg3.9121733333333335
fwhmx3.80661
fwhmy4.14356
fwhmz3.78635
icvscsf0.20782589086437717
icvsgm0.46549669156003004
icvswm0.3266774175755928
inumed1.1466578245162964
inurange0.33249982595443717
qi10.0
qi20.0008385838331280143
rpvecsf23.462695854292033
rpvegm11.747895579882968
rpvewm19.273117405843564
sizex180
sizey256
sizez256
snrcsf2.835589802308237
snrgm10.481764843052648
snrtotal11.2997095004308
snrwm20.581773855931516
snrdcsf12.278699267700825
snrdgm24.877009561713752
snrdtotal25.375148072717618
snrdwm38.96973538873828
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.7477993063638158
summarybgmad16.81157875061035
summarybgmean61.37723159790039
summarybgmedian58.927608489990234
summarybgn2851108.0
summarybgp0536.67909545898438
summarybgp9594.48470726013184
summarybgstdv18.252243041992188
summarycsfk-0.0405618493195834
summarycsfmad123.15512084960938
summarycsfmean318.0879821777344
summarycsfmedian315.0860290527344
summarycsfn19117.0
summarycsfp05145.2146728515625
summarycsfp95496.56533203125
summarycsfstdv111.11543273925781
summarygmk0.37767427366250494
summarygmmad57.37206268310547
summarygmmean639.7645874023438
summarygmmedian638.3736572265625
summarygmn37944.0
summarygmp05542.0676544189453
summarygmp95743.7293182373046
summarygmstdv60.90245819091797
summarywmk1.0491425931107639
summarywmmad43.37751770019531
summarywmmean997.3768310546875
summarywmmedian1000.009765625
summarywmn185899.0
summarywmp05912.3724609375
summarywmp951071.5480346679688
summarywmstdv48.58702087402344
tpmoverlapcsf0.21046942472457886
tpmoverlapgm0.5278806090354919
tpmoverlapwm0.5343533754348755
wm2max0.5718595662186237

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum53ff3a7c9000f82e4ad6b71919f800ab
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.